PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn298161
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 398aa    MW: 45072.7 Da    PI: 5.7594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn298161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1813.1e-56952211129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL++kv++  + + ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ +g l
  Achn298161  95 LPPGFRFHPTDEELITHYLNHKVSDFGFAA-RAIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFH-GGIL 191
                 79*************************999.89***************999999****************************************.**** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfykgrapkgekt+Wvmheyrle
  Achn298161 192 VGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 221
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.850.101.6E-6176IPR001752Kinesin motor domain
SuperFamilySSF1019416.15E-6591241IPR003441NAC domain
PROSITE profilePS5100559.96395241IPR003441NAC domain
PfamPF023651.1E-2896220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTGPDGASEE DWGVNYQALN DLFHISQSRS RIFTDEFSVQ MVEIYNEKVA SLKETIAKKD  60
EEIERLQLLK DLKNVYQGVN GEKRDLTLKD MEENLPPGFR FHPTDEELIT HYLNHKVSDF  120
GFAARAIADV DLNKCEPWDL PAKASMGEKE WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG  180
KDKEIFHGGI LVGMKKTLVF YKGRAPKGEK TNWVMHEYRL ETKLSFKPTK EEWVVCRVFQ  240
KSASALKKLQ ETQSSQPSLD SPGDNYNTLA SEFGDIELPN LNSIVNSSSA ISNGSIQNYN  300
GNNNANMNMN LNILPSLSWP SNLLGSNISM NALLLRALQL RSYQPIREAS NVDYSYFMPK  360
GISQLGTDFV SSNIQVSSSR VLDSQPQEQP FNLDTIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-579424719174NAC domain-containing protein 19
3swm_B7e-579424719174NAC domain-containing protein 19
3swm_C7e-579424719174NAC domain-containing protein 19
3swm_D7e-579424719174NAC domain-containing protein 19
3swp_A7e-579424719174NAC domain-containing protein 19
3swp_B7e-579424719174NAC domain-containing protein 19
3swp_C7e-579424719174NAC domain-containing protein 19
3swp_D7e-579424719174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028053303.11e-152NAC domain-containing protein 87
RefseqXP_028053311.11e-152NAC domain-containing protein 87
TrEMBLA0A2R6P4J30.0A0A2R6P4J3_ACTCH; NAC domain-containing protein
STRINGPOPTR_0015s03700.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-110NAC domain containing protein 58