PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn298601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 318aa    MW: 35700.3 Da    PI: 8.2381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn298601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003156175120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  nL+ H+
  Achn298601 156 FSCPVCCKTFNRYNNLQMHM 175
                 89*****************9 PP
2zf-C2H216.81.9e-05240262123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cgk+F  k + ++H +++
  Achn298601 240 FTCRKCGKPFAVKGDWRTHEKNC 262
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.28156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159156183IPR007087Zinc finger, C2H2
SuperFamilySSF576679.52E-7156178No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576679.52E-7235260No hitNo description
Gene3DG3DSA:3.30.160.601.8E-4238260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035555240260IPR015880Zinc finger, C2H2-like
SMARTSM00355140266289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTEPYSNFFT GWFNFIPLQP HYSPPLPHNL HPNPNPNPTT TNFSPQNHLS PSSLPLREAL  60
PLLNNLTTTT ATTSQDHHEP SCSTTTARDE NVALHIGLPS PSSHDNLETN WLSPHPDQVT  120
EKESVDVVLG YPLNRLSKGQ FWIPTPSQIL SGPTQFSCPV CCKTFNRYNN LQMHMWGHGS  180
QYRKGPESLR GIQPTAMLRL PCYCCAPGCK HHIDHPRSRP LKDFRTLQTH FKRKHGLKPF  240
TCRKCGKPFA VKGDWRTHEK NCGKVWYCIC GSDFKHKRSL KDHIRAFGHG HGGLGIGCFG  300
EEEELASEVE HDGEASV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123185.11e-145zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2R6RA880.0A0A2R6RA88_ACTCH; Zinc finger protein
STRINGGLYMA12G36660.21e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.16e-99WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]