PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn299211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 525aa    MW: 58403.3 Da    PI: 5.2316
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn299211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-082553031946
                      TTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  19 lGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                      lG++                      +W+ Ia+ ++ gRt++++k++w++
       Achn299211 255 LGKRveykttgetasgsvldtnwdsiRWSIIAAQLP-GRTDNDIKNYWNT 303
                      555555555566666666666677778*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF567523.66E-6512261IPR001544Aminotransferase class IV
Gene3DG3DSA:3.30.470.101.7E-3615128No hitNo description
Gene3DG3DSA:3.20.10.106.6E-42129263No hitNo description
PfamPF010639.1E-25144252IPR001544Aminotransferase class IV
PROSITE patternPS007700178207IPR018300Aminotransferase, class IV, conserved site
CDDcd001671.31E-5277305No hitNo description
SuperFamilySSF466895.14E-7280310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-11280309IPR009057Homeodomain-like
PROSITE profilePS500906.26281305IPR017877Myb-like domain
PfamPF002491.3E-5281303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDESPFCSSG SDDECRENDW DNLGFGIKPT DYMYVTKCTE DGVFQQGQLN RYGNIELNPS  60
VGVLNYGQGI FEGTKAFRRE DGGLFLFCPD QNAIGMQYGA DRMCMPSPSI DQFINGVKQT  120
ALANRRWDEF HRGTRGGVGG VKSVTNYALV LKALTRAKSR GFSDVIYLDS VHKKYLEEAT  180
SCNVFVVKGN RISTPPTSGN ILHGITRKTV IDIAHDHGYR VEERTVLVEE LLDGDEVFCT  240
RTAVTIVPVV SITHLGKRVE YKTTGETASG SVLDTNWDSI RWSIIAAQLP GRTDNDIKNY  300
WNTRLKKKLL GKQRKAHQPH KGNRNLKQGN TRKGSDDQNS MVNYDASNQL APYWPELPVL  360
APIPYSNQEP CFNDHTSIRK LLIKLGGKFS SDENNPIQDG TNLHFCTNLS SNQQPYVPSI  420
DHMVSSASAD ALYACTSQLT SIQYDMDEQE MVLLPGQSNF PLGFEDALYE NPQRLDGLEL  480
LYGDMVSNAT ESTSGESFGW GENMSTLSYP PIISNYEDLH QGMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jz6_A4e-321125422331Branched-chain amino acid aminotransferase
3jz6_B4e-321125422331Branched-chain amino acid aminotransferase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtConverts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine. Also involved in methionine chain elongation cycle of aliphatic glucosinolate formation. Catalyzes the conversion of 5-methylthiopentyl-2-oxo and 6-methylthiohexyl-2-oxo acids to their respective Met derivatives, homomethionine and dihomo-methionine, respectively. {ECO:0000269|PubMed:18162591}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Diurnally expressed. {ECO:0000303|PubMed:18162591}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9M4013e-92BCAT3_ARATH; Branched-chain-amino-acid aminotransferase 3, chloroplastic
STRINGXP_002510033.11e-114(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-13myb domain protein 84
Publications ? help Back to Top
  1. Diebold R,Schuster J,Däschner K,Binder S
    The branched-chain amino acid transaminase gene family in Arabidopsis encodes plastid and mitochondrial proteins.
    Plant Physiol., 2002. 129(2): p. 540-50
    [PMID:12068099]
  2. Schuster J,Knill T,Reichelt M,Gershenzon J,Binder S
    Branched-chain aminotransferase4 is part of the chain elongation pathway in the biosynthesis of methionine-derived glucosinolates in Arabidopsis.
    Plant Cell, 2006. 18(10): p. 2664-79
    [PMID:17056707]
  3. Knill T,Schuster J,Reichelt M,Gershenzon J,Binder S
    Arabidopsis branched-chain aminotransferase 3 functions in both amino acid and glucosinolate biosynthesis.
    Plant Physiol., 2008. 146(3): p. 1028-39
    [PMID:18162591]
  4. Less H,Galili G
    Principal transcriptional programs regulating plant amino acid metabolism in response to abiotic stresses.
    Plant Physiol., 2008. 147(1): p. 316-30
    [PMID:18375600]
  5. Gigolashvili T, et al.
    The plastidic bile acid transporter 5 is required for the biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana.
    Plant Cell, 2009. 21(6): p. 1813-29
    [PMID:19542295]
  6. Niehaus TD, et al.
    Arabidopsis and maize RidA proteins preempt reactive enamine/imine damage to branched-chain amino acid biosynthesis in plastids.
    Plant Cell, 2014. 26(7): p. 3010-22
    [PMID:25070638]
  7. Lächler K,Imhof J,Reichelt M,Gershenzon J,Binder S
    The cytosolic branched-chain aminotransferases of Arabidopsis thaliana influence methionine supply, salvage and glucosinolate metabolism.
    Plant Mol. Biol., 2015. 88(1-2): p. 119-31
    [PMID:25851613]