PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn299261

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRF

Protein Properties

Length: 229aa MW: 24731.6 Da PI: 10.0256

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn299261	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	6e-25	149	193	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e Achn299261 149 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 193 79****************************************986 PP
2	QLQ	66	8.9e-23	79	115	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k Achn299261 79 SPFTPSQWMELEHQALIYKYITANVPVPSNLLTPIRK 115 89*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.1E-13	79	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.927	80	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-16	80	114	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.847	149	193	IPR014977	WRC domain
Pfam	PF08879	3.1E-21	150	192	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSFGDESERE RENPETKHKW YGSGFLKEEG PEPKVAKTDV LSANSKAMLR PNSSFLSHGH 60 GYGGLNASSM HGVLSGVRSP FTPSQWMELE HQALIYKYIT ANVPVPSNLL TPIRKALDSA 120 GLSGFSVGPL RSSTLGWGAY HLGYSNNTDP EPGRCRRTDG KKWRCSRDAV VDQKYCERHM 180 NRGRHRSRKP VEGQNGHSVS GTATTTAKPS STSALVVPGG GASNSLGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283504.2	1e-97	PREDICTED: growth-regulating factor 1
Swissprot	Q6AWY2	1e-59	GRF7_ORYSJ; Growth-regulating factor 7
Swissprot	Q6AWY3	4e-59	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2R6Q0J5	1e-149	A0A2R6Q0J5_ACTCH; Growth-regulating factor like
STRING	VIT_18s0001g08650.t01	4e-97	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1688	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-58	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]