PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn299441

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 201aa MW: 22039.4 Da PI: 8.324

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn299441	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.3	1.1e-28	15	116	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+ lr++C ++C+l+p++ + q++++ +v k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++++ Achn299441 15 SCNGCRALRKGCCESCILRPCLewiesARGQSNATLFVSKFFGRSDLLSFIAAVPESKRPALFQSLLFEACGRTVNPVKGAVGLLSTGNWHVCQAAVNT 113 6*******************9998666789*************************************************************9988 PP DUF260 95 all 97 +l+ Achn299441 114 VLA 116 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.702	14	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-24	15	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MIKIIKDKKF KNERSCNGCR ALRKGCCESC ILRPCLEWIE SARGQSNATL FVSKFFGRSD 60 LLSFIAAVPE SKRPALFQSL LFEACGRTVN PVKGAVGLLS TGNWHVCQAA VNTVLAGGTL 120 RPLTSPILTH EASDAFDSPK IWNFQKWCSE ASQRQPYDLK KAAAMLSDSE ESEMVVGFEG 180 GDYGAEKLRA EEPKLLNLFV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028056214.1	9e-72	LOB domain-containing protein 39-like
Swissprot	Q9FN11	3e-59	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2R6Q0G7	1e-133	A0A2R6Q0G7_ACTCH; LOB domain-containing protein
STRING	PGSC0003DMT400055393	9e-63	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-61	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]