PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn299651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 155aa    MW: 17075.9 Da    PI: 9.1349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn299651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-172776255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  Achn299651 27 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFNLRG 76
                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9312784IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-202785IPR016177DNA-binding domain
SMARTSM003804.1E-352790IPR001471AP2/ERF domain
PRINTSPR003671.6E-112839IPR001471AP2/ERF domain
CDDcd000185.50E-262885No hitNo description
PfamPF008471.6E-102876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-292885IPR001471AP2/ERF domain
PRINTSPR003671.6E-116686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MESGECCSSS TSPEKRKQRQ NQRDNKPYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP  60
VAAARAYDTA VFNLRGPSAR LNFPEFITEE DDLRGGGSGA DLSAASIRKK ATEVGARIDA  120
LETAHHHAPA ESNWGRASVK PDLNEYPGPE SSDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142684463ATERF1
3gcc_A1e-142684463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819909.12e-72PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotO221743e-51ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2R6Q0541e-110A0A2R6Q054_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_18s0001g10150.t015e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-46DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]