PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn300421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 260aa MW: 28066.9 Da PI: 5.6391

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn300421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	50	5.9e-16	127	166	21	59
-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrC+++ gC ++k+ver+++dp ++++tY eHnh+ Achn300421 127 RRGYYRCSTSkGCLARKQVERNRSDPGMFIVTYAAEHNHP 166 599**9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	4.7E-10	116	167	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	7.0E-16	123	168	IPR003657	WRKY domain
Pfam	PF03106	1.8E-13	125	166	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-13	126	168	IPR003657	WRKY domain
PROSITE profile	PS50811	21.459	128	168	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MADDWDLHAV VRGCAAATTA AATSSSTTTT GSDQFQFFPD PIEPRRSESV EVFHDLFKPF 60 VSELQPLISR NRPISPLSVL GGLQDLSSPQ QQRQQQQKQQ QKQFVAGSRA RVSANNTSHT 120 PSPRSKRRGY YRCSTSKGCL ARKQVERNRS DPGMFIVTYA AEHNHPVPTH RNSLAGSTRQ 180 KPVTPPSVSA GETSQPSCSS APVSPAREDL IEDEDDDFGV SDMVVGDDFF EGLEEIAGDC 240 FSGELQESLP ANRLAGGGG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028057975.1	2e-71	WRKY transcription factor 22
Swissprot	O04609	2e-55	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A2R6R9N4	1e-149	A0A2R6R9N4_ACTCH; WRKY transcription factor
STRING	EOX95862	2e-65	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2591	24	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	6e-51	WRKY family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]