PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn300601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 239aa    MW: 27216.6 Da    PI: 5.0722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn300601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1977126155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +gr++AeIrd      + +r +lg+++taeeAa  +++a+ +++g
  Achn300601  77 TKYRGVRRRP-WGRFAAEIRDT-----SgARLWLGTYDTAEEAAMVYDEAAIRIRG 126
                 69********.**********4.....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381238.8E-332234IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008471.6E-1377126IPR001471AP2/ERF domain
CDDcd000182.06E-2877132No hitNo description
Gene3DG3DSA:3.30.730.107.1E-2678132IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1978133IPR016177DNA-binding domain
SMARTSM003802.5E-3078140IPR001471AP2/ERF domain
PROSITE profilePS5103221.36478134IPR001471AP2/ERF domain
PRINTSPR003676.6E-107990IPR001471AP2/ERF domain
PRINTSPR003676.6E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSAKTLRIVR IYVTDADATD SSSDEDAPVP RDRVKKKHVT EIRIERDCNY ANRMASAKKR  60
PKKKVHLENS EEAAFGTKYR GVRRRPWGRF AAEIRDTSGA RLWLGTYDTA EEAAMVYDEA  120
AIRIRGTNAF TNIIEPPAMD LTSKERRDLA SPNSVLRFDN KIQSFEDDCL PLDPCFLNDF  180
FDFRSPSPIF FGDVSVMDHV RDSNLSDLCH VSPVNLDEDL RSFAWDIDDF FQDPLVLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2074133162ATERF1
3gcc_A5e-2074133162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056791.16e-73LOW QUALITY PROTEIN: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A2R6R9P11e-158A0A2R6R9P1_ACTCH; Ethylene-responsive transcription factor
STRINGPOPTR_0014s09020.12e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-30cytokinin response factor 5