PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn300931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 241aa    MW: 27603.3 Da    PI: 5.9185
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn300931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.73.6e-4361371128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                 +ppG+rF Pt+eelv++yL+ k+++++ el++vi+ +di+k+ePw Lp+     ++ ++++w+fF++ ++++a+g r++r+++sgyWka g+   v+s+
  Achn300931   6 MPPGYRFYPTEEELVSFYLRTKLQRNRDELDRVIPVLDIFKLEPWYLPElsgeLCHRDTEQWFFFAPIQEREAHGGRPSRTMASGYWKAMGSPSYVYSS 104
                 79****************************999**************9646653444677*************************************** PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +++++g+kkt+vfy+g+ap+g+kt+W m+eyr+
  Achn300931 105 DNRVIGVKKTMVFYEGKAPTGRKTKWKMNEYRA 137
                 *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-483160IPR003441NAC domain
PROSITE profilePS5100547.7746161IPR003441NAC domain
PfamPF023656.8E-237136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALEEMPPGY RFYPTEEELV SFYLRTKLQR NRDELDRVIP VLDIFKLEPW YLPELSGELC  60
HRDTEQWFFF APIQEREAHG GRPSRTMASG YWKAMGSPSY VYSSDNRVIG VKKTMVFYEG  120
KAPTGRKTKW KMNEYRAIEQ PAGCAVPKLR NELSLCRVYV VSGSFRAFDR RPLVSATSRT  180
GFWQIPGDPS TQTTETVEKI SCSSSESSSS GEDPFEFSQT KLGMFNGLDP LLEWDQLTWV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-34615917163NO APICAL MERISTEM PROTEIN
1ut4_B9e-34615917163NO APICAL MERISTEM PROTEIN
1ut7_A9e-34615917163NO APICAL MERISTEM PROTEIN
1ut7_B9e-34615917163NO APICAL MERISTEM PROTEIN
4dul_A9e-34615917163NAC domain-containing protein 19
4dul_B9e-34615917163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083537.11e-106NAC domain-containing protein 90-like
SwissprotQ9FMR39e-83NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2R6PEN51e-178A0A2R6PEN5_ACTCH; NAC domain-containing protein
STRINGevm.model.supercontig_195.144e-98(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-83NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]