PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn300981

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 205aa MW: 23194.9 Da PI: 9.8365

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn300981	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.4	6.5e-28	25	102	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++++w+fF++r++++a+g r++r+t+sgyWkatg+ v+s++++++g+kkt+vfykg+ap g+kt+W mheyr+ Achn300981 25 CRKDKEQWFFFAPRQEREAHGGRPSRTTTSGYWKATGSPGYVYSSENRVIGVKKTMVFYKGKAPAGRKTKWKMHEYRA 102 445678**********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.624	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-31	19	124	IPR003441	NAC domain
Pfam	PF02365	5.3E-14	26	101	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MFRNGYVADQ SQTWARAEQL CGKLCRKDKE QWFFFAPRQE REAHGGRPSR TTTSGYWKAT 60 GSPGYVYSSE NRVIGVKKTM VFYKGKAPAG RKTKWKMHEY RAIEQQAGCA VPKLRHELTL 120 CRVYVISGSF RAFDRRPTGA ETSDAVTEQR HGDQSNSQAN KTVEKTRSPE SSYSGEGHFE 180 PPQANTGMFS ALEPLWEWEQ LNLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-24	29	124	70	163	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-24	29	124	70	163	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-24	29	124	70	163	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-24	29	124	70	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-24	29	124	73	166	NAC domain-containing protein 19
3swm_B	4e-24	29	124	73	166	NAC domain-containing protein 19
3swm_C	4e-24	29	124	73	166	NAC domain-containing protein 19
3swm_D	4e-24	29	124	73	166	NAC domain-containing protein 19
3swp_A	4e-24	29	124	73	166	NAC domain-containing protein 19
3swp_B	4e-24	29	124	73	166	NAC domain-containing protein 19
3swp_C	4e-24	29	124	73	166	NAC domain-containing protein 19
3swp_D	4e-24	29	124	73	166	NAC domain-containing protein 19
4dul_A	4e-24	29	124	70	163	NAC domain-containing protein 19
4dul_B	4e-24	29	124	70	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028110409.1	6e-85	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	4e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2R6PEN4	1e-135	A0A2R6PEN4_ACTCH; NAC domain-containing protein
STRING	cassava4.1_014914m	3e-77	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	4e-70	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]