PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn301521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 115aa    MW: 13126.2 Da    PI: 10.5634
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn301521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.66e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ss
  Achn301521  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALILFSSRGKLYEFSS 59
                79***********************************************96 PP
2K-box58.92.2e-20581103284
       K-box  32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                  ++ R+llGe+Le L+ keL+qLe+qLe+slk+iRskK+++l+e+ + l++k 
  Achn301521  58 SSTSRNLLGEELEALTTKELEQLERQLENSLKQIRSKKEQMLVESNNALRRKV 110
                 5788**********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.768161IPR002100Transcription factor, MADS-box
CDDcd002651.14E-37261No hitNo description
SuperFamilySSF554554.71E-31281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.18740114IPR002487Transcription factor, K-box
PfamPF014861.5E-1556111IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALILFSS RGKLYEFSST  60
SRNLLGEELE ALTTKELEQL ERQLENSLKQ IRSKKEQMLV ESNNALRRKV STSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-22161161MEF2C
5f28_B7e-22161161MEF2C
5f28_C7e-22161161MEF2C
5f28_D7e-22161161MEF2C
6byy_A7e-22161161MEF2 CHIMERA
6byy_B7e-22161161MEF2 CHIMERA
6byy_C7e-22161161MEF2 CHIMERA
6byy_D7e-22161161MEF2 CHIMERA
6bz1_A7e-22163163MEF2 CHIMERA
6bz1_B7e-22163163MEF2 CHIMERA
6bz1_C7e-22163163MEF2 CHIMERA
6bz1_D7e-22163163MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3736017e-48AF373601.1 Vitis vinifera MADS-box protein 2 (MADS2) mRNA, complete cds.
GenBankAM4561037e-48AM456103.1 Vitis vinifera contig VV78X003633.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059218.12e-50MADS-box protein EJ2-like
SwissprotQ8LLR21e-47MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2R6PD651e-55A0A2R6PD65_ACTCH; MADS-box protein
STRINGLus100178704e-53(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]