PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn301741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 316aa    MW: 35156.5 Da    PI: 6.9074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn301741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-087297127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ykt+ C  f + G C+ G+ C+FaHgp
  Achn301741 72 YKTRMCLKFVE-GNCRNGEFCTFAHGP 97
                9**********.*************96 PP
2zf-CCCH30.94.6e-10131156126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +k+++C++f+ + +C+yG++C+F H+
  Achn301741 131 QKMKICKNFFNGEECPYGEKCNFLHV 156
                 5899*******66************7 PP
3zf-CCCH44.33e-14204229126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ +  tG+C++G+rC+FaHg
  Achn301741 204 WKTKLCSKWETTGQCPFGERCHFAHG 229
                 8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-869102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-1469104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0477198IPR000571Zinc finger, CCCH-type
SMARTSM003560.00237197IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-57297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7129157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441130158IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5130157IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7131156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8132155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-17200234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601203231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10203234IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7203230IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-11204229IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNFSDHPPHP FMPPPVPGGD GFWPSDEDPD NPNFDFAPPL KRPRNFGINN PNSRINNPPN  60
PPMNRGTGHI FYKTRMCLKF VEGNCRNGEF CTFAHGPEEL REPPPNWQEI VAAKDNLIGI  120
GNWSDDQRMI QKMKICKNFF NGEECPYGEK CNFLHVDPRE NSAICIGTMG QRTGSGPDQC  180
DGNRSGSFVS DSDRFRGNAK GSYWKTKLCS KWETTGQCPF GERCHFAHGL SELQLPNGRI  240
EAEVVDALTI PIKPVSLPVN DGPPSKAVFT APAKEDGDGK KGFSKWKGPK KTNRIYADWI  300
DDLTPPHNWP SVVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096225.11e-133zinc finger CCCH domain-containing protein 39-like
RefseqXP_028096228.11e-133zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-71C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2R6QRU10.0A0A2R6QRU1_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010049974.11e-100(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-64C3H family protein