PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn303741

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 165aa MW: 18232.9 Da PI: 6.7421

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn303741	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.6	5e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC+++pyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql+ +la++++ Achn303741 6 PCASCKLLRRRCAKDCIFSPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEATARMRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 104 7***********************************************************************************************998 PP DUF260 100 e 100 e Achn303741 105 E 105 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.511	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKD CIFSPYFPPD DPHKFAIVHK VFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA TARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MQQEPTLPMN 120 QIDPVDEKSL LLSDTNFNNL PQYLGFASSS SVIQDPPKRE SLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-50	2	116	7	124	LOB family transfactor Ramosa2.1
5ly0_B	8e-50	2	116	7	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018828618.1	1e-100	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	2e-79	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2R6P6G5	1e-119	A0A2R6P6G5_ACTCH; LOB domain-containing protein
STRING	XP_010257046.1	6e-98	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-82	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]