PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn304371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 231aa    MW: 24094.4 Da    PI: 8.926
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn304371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.8e-093459227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+lC+ f     Ck+Gd+C+FaHg+
  Achn304371 34 KTKLCNKFNTAEGCKFGDKCHFAHGE 59
                8***********************96 PP
2zf-CCCH32.61.4e-10197221126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+ C +fa+ G C +G+rC+FaHg
  Achn304371 197 FKTKVCEHFAK-GSCTFGERCHFAHG 221
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-43259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-83262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5633260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-143263IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-63459IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.47E-16100183IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.0E-16104176IPR004088K Homology domain, type 1
SMARTSM003221.9E-12104174IPR004087K Homology domain
PROSITE profilePS5008414.844105169IPR004088K Homology domain, type 1
PfamPF000138.2E-11107171IPR004088K Homology domain, type 1
CDDcd001054.12E-15107169No hitNo description
Gene3DG3DSA:4.10.1000.105.3E-15194226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8195226IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7196222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.511196223IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8197221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAQMTNLGGN PSIPPARNAM APPPFADGPA STVKTKLCNK FNTAEGCKFG DKCHFAHGEM  60
ELGRPGIPAY EDPRGMGSMP GRFSFSGKGG PPQPIPAAAA NFGASATAKI SIDASLAGAV  120
IGKGGVNSKQ ICRMTGVKLS IKEHESDPNQ RNIDLEGTFD QINQASSMVR ELINNVAAAT  180
HHHPPAKPTM AAPANNFKTK VCEHFAKGSC TFGERCHFAH GAVELRNSVA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056864.11e-109zinc finger CCCH domain-containing protein 14-like
RefseqXP_028111176.11e-109zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-77C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2R6QKW71e-152A0A2R6QKW7_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_13s0156g00320.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-53C3H family protein