PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn304551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 309aa    MW: 33584.3 Da    PI: 8.4796
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn304551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-18143197256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Achn304551 143 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 197
                 788899***********************************************98 PP
2HD-ZIP_I/II127.94.3e-41143233192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
   Achn304551 143 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 233
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.4E-66098IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.9E-18127193IPR009057Homeodomain-like
SuperFamilySSF466891.88E-18135200IPR009057Homeodomain-like
PROSITE profilePS5007116.779139199IPR001356Homeobox domain
SMARTSM003894.5E-15141203IPR001356Homeobox domain
PfamPF000462.5E-15143197IPR001356Homeobox domain
CDDcd000864.10E-15143200No hitNo description
PROSITE patternPS000270174197IPR017970Homeobox, conserved site
SMARTSM003401.2E-23199243IPR003106Leucine zipper, homeobox-associated
PfamPF021836.6E-11199233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSLGINGSGT GRQQLEREKS TTDESQEGSR NRDDPTAYIG STLQLDLLPL SPLPRHTSSH  60
GSSEVRGFDV NRLPPPPPPA AEDGAAAASS PNSGASSFQM DLWSVGGSKR GSPEAGGGGN  120
DGGVEAERES SRASDDDDNG IARKKLRLSK EQSAYLEESF KEHNTLNPKQ KLALAKQLNL  180
RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLHKELQELR ALKNTSNPFY  240
MQLPATTLTM CPSCERVAST TATASSMVTP NSTNPPSKAI PASPFPLARP RLYPFSHTQS  300
QPHPSAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191199RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028075617.11e-111homeobox-leucine zipper protein HOX11-like
SwissprotA2YW037e-88HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD07e-88HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2R6RAD00.0A0A2R6RAD0_ACTCH; Homeobox-leucine zipper protein
STRINGXP_010265939.11e-109(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-60homeobox from Arabidopsis thaliana