PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn305641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 261aa    MW: 28922.9 Da    PI: 9.8381
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn305641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-1455105155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y GVr ++   +Wv+e+r+p++   + r++lg+f  +e+Aa+a++ a+++l+ 
  Achn305641  55 PVYNGVRLKS-CDKWVCEVREPKK---KSRIWLGTFPNPEMAARAYDVAALALYS 105
                 5799**9766.8*********854...6***********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-955104IPR001471AP2/ERF domain
SMARTSM003801.4E-2356119IPR001471AP2/ERF domain
PROSITE profilePS5103219.25656113IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1856115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2656115IPR001471AP2/ERF domain
PRINTSPR003673.9E-55768IPR001471AP2/ERF domain
CDDcd000181.41E-2557115No hitNo description
PRINTSPR003673.9E-57995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNLEDDSSPY SSSSSSLFSN ITKNPSSSSK PTNVPHPTSH KRKVGRNKFR ETRHPVYNGV  60
RLKSCDKWVC EVREPKKKSR IWLGTFPNPE MAARAYDVAA LALYSEMAKL NFPDSATLLP  120
RAKSSSARDI QMAVLEATRA VQLTIPSPSS SPSSSLLSSR RTSLTNHTSP RLTSIPRVKY  180
QKNLLKPAVV PEDYSVVSVR DSKNVLDSSE TGFVDEEALF NMPGLLDSMA EGLLLTPPAM  240
KRGFSWDAMD CDMDMTLWRY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464341.13e-73dehydration-responsive element-binding protein 3
RefseqXP_028110279.13e-73dehydration-responsive element-binding protein 1F-like
TrEMBLA0A2R6Q7890.0A0A2R6Q789_ACTCH; Dehydration-responsive element-binding protein like
STRINGPOPTR_0009s14990.14e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.15e-37C-repeat/DRE binding factor 2