PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn306131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 345aa    MW: 38099.6 Da    PI: 8.7418
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn306131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.99.8e-2962119260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkgsefprsYY+Ct ++C++kk  er +  +k++ei+Y+g+H+h+k
  Achn306131  62 NDGYNWRKYGQKLVKGSEFPRSYYKCTNSNCEAKKIFERYH-IEKITEIVYKGTHDHPK 119
                 8***************************************9.899************85 PP
2WRKY101.84e-32235293159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+C+ agC v+k+ver+++dpk+v++tYeg+H h+
  Achn306131 235 LDDGYRWRKYGQKVVRGNPNPRSYYKCANAGCAVRKHVERASHDPKAVITTYEGKHSHD 293
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.22856120IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-2457120IPR003657WRKY domain
SuperFamilySSF1182901.96E-2259120IPR003657WRKY domain
SMARTSM007741.2E-2861119IPR003657WRKY domain
PfamPF031064.9E-2362118IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-36220295IPR003657WRKY domain
SuperFamilySSF1182901.83E-28227295IPR003657WRKY domain
PROSITE profilePS5081137.447230295IPR003657WRKY domain
SMARTSM007745.0E-37235294IPR003657WRKY domain
PfamPF031063.5E-25236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTSSKELKLP ASVHEFASSA TAPTGVNSDE LKKGVHLNTG VQASKSDHNE TGHPFVAERS  60
SNDGYNWRKY GQKLVKGSEF PRSYYKCTNS NCEAKKIFER YHIEKITEIV YKGTHDHPKP  120
RPAHRFAVGS IMLVQAKTDM FSSLTSQEDK SAINAHVTRN IEPNGTPELS PHGTNDASVE  180
GAATLLNCNN DQVDGDDPFS KRRKLYGVRI NVTTTVKYIR ETRVVVQTVS EVDILDDGYR  240
WRKYGQKVVR GNPNPRSYYK CANAGCAVRK HVERASHDPK AVITTYEGKH SHDVPAAKSR  300
SHDTVACANL NCMSKVRSEE SNCISLDLGF GICSGAENRD AEPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3762296878Probable WRKY transcription factor 4
2lex_A1e-3762296878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127034.11e-178probable WRKY transcription factor 20 isoform X1
RefseqXP_028127035.11e-179probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-108WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2R6PR500.0A0A2R6PR50_ACTCH; WRKY transcription factor
STRINGVIT_19s0090g01720.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-112WRKY family protein