PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn306541

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 229aa MW: 25091.5 Da PI: 8.5839

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn306541	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	80.2	7.7e-25	54	228	26	216
GAGA_bind 26 lqlmssiaerdaki.....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksids 110 +lmss+ erd+k+ +++++ + + ++ +++rd m++ rd ++++ ++k+l++l+ + + + v ++ + +s Achn306541 54 SDLMSSVGERDTKPflsgrEHAHAGILSANGGYHPRDcvvseaplhMDY-ARDCWVNN--------RDKFLNMLPGNSN--------YAVYPEPSASHS 135 689************9544555688999***999999999999.89999999........789**6654........788899999999 PP GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlP 209 ++ l+ p+l+++ + +e ++ +ke +++kkr +++pk++kakk+kk ++ s+++ +++ +++k +kk++d+v+ng+++D+s++P Achn306541 136 MHILQPPELSNDG-----RAGIEDPN------IVKEGSSSKKRTGSNTPKAPKAKKAKKGRSLSNENGNSSI--QQVKPTKKNVDVVINGIDMDISGIP 221 9984444444333.....33344444......4445555555666779999999999998888877777776..68******************* PP GAGA_bind 210 vPvCsCt 216 vP+CsCt Achn306541 222 VPICSCT 228 ****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	9.5E-14	47	228	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.5E-34	53	228	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGTSSRYYDS HPHTTTMLHH QRLTPCIIPK SNELAFLFLK ILCKIVLEYE IVHSDLMSSV 60 GERDTKPFLS GREHAHAGIL SANGGYHPRD CVVSEAPLHM DYARDCWVNN RDKFLNMLPG 120 NSNYAVYPEP SASHSMHILQ PPELSNDGRA GIEDPNIVKE GSSSKKRTGS NTPKAPKAKK 180 AKKGRSLSNE NGNSSIQQVK PTKKNVDVVI NGIDMDISGI PVPICSCT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107202.1	4e-77	protein BASIC PENTACYSTEINE2-like isoform X1
TrEMBL	A0A2R6Q2Y5	1e-104	A0A2R6Q2Y5_ACTCH; Protein BASIC like
STRING	VIT_01s0011g06380.t01	9e-70	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-23	basic pentacysteine 2