PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn306851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 193aa    MW: 21764.9 Da    PI: 8.5613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn306851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.9e-101191351026
                 GGTS--TTTTT-SS-SS CS
     zf-CCCH  10 artGtCkyGdrCkFaHg 26 
                 ++tG C+yG++C+FaHg
  Achn306851 119 QETGKCPYGENCQFAHG 135
                 79**************8 PP
2zf-CCCH22.61.8e-07148173126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte Cr  +++ tC+yG rC+F H+
  Achn306851 148 YKTEVCRMVLAGDTCPYGHRCHFRHS 173
                 9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2008.0E-51965IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561122.05E-93593IPR011009Protein kinase-like domain
PROSITE patternPS0010706183IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.205.8E-966103No hitNo description
SMARTSM003561.6115136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6119141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.451119137IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-7119135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-11119142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-9143177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-13143176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188147175IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5147174IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4148173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTICYLKRPR KTLFNKVVAL KKVRADEQNV EGFLNHYESL APKQYKYSDL DNMTNSFKDK  60
LGQGAYGAVY KGKLLDGRLV AVKILSEEYS SESLSTVTNG VDMSEESLRS LQIPSEPVQE  120
TGKCPYGENC QFAHGIMELR PVIRHPRYKT EVCRMVLAGD TCPYGHRCHF RHSLTDQERL  180
LGTLRLTADL NG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-191171731167Butyrate response factor 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.18e-39C3H family protein