PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn307811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 175aa    MW: 19960.3 Da    PI: 6.1303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn307811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161275148
                     TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEd +l+++v+ +G g                 +W++Ia +++ gRt++++k++w+++l
       Achn307811 12 KGLWKPEEDVILKKYVETHGEGnwasvsqksggwdvpscSWSLIAGRLP-GRTDNEVKNYWNTHL 75
                     678**********************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-20578IPR009057Homeodomain-like
PROSITE profilePS5129419.006779IPR017930Myb domain
SuperFamilySSF466895.01E-14780IPR009057Homeodomain-like
SMARTSM007171.5E-131177IPR001005SANT/Myb domain
CDDcd001673.84E-111575No hitNo description
PfamPF139217.8E-81582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDIKEVKPRV KKGLWKPEED VILKKYVETH GEGNWASVSQ KSGGWDVPSC SWSLIAGRLP  60
GRTDNEVKNY WNTHLNKKNS QHKTTMLGPN KKKEPQQLPP SQPICSRNSE NNNEGLHGRK  120
DEEVTIKSQQ MEDTKSFNFD VEEPSLLSAN NALFFYDDEP FMPIWDSFAF SEAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098262.19e-61transcription factor MYB82-like
TrEMBLA0A2R6S1G51e-111A0A2R6S1G5_ACTCH; Transcription factor like
STRINGVIT_11s0016g05660.t018e-43(Vitis vinifera)
STRINGVIT_11s0016g05690.t017e-43(Vitis vinifera)
STRINGcassava4.1_027214m6e-43(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-30myb domain protein 82