PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn309021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 216aa    MW: 24190.2 Da    PI: 6.1726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn309021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86e-0672120255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 rr +++ +r R +ri ++++ L  llP++     k  sK +     +++Ik+Lq
  Achn309021  72 RRRASATDRIRKARIAERLDALHGLLPSP-----KEGSKDSLIDDIIDHIKYLQ 120
                 67789***********************9.....5689999999*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.47170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-671126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-872130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-572124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNRTSLSISV YVPRLREHCK SYTWFRFATL LFHMNSSVAI MCSERQESNE SHSRVAGAAP  60
GFSSKPRNHI SRRRASATDR IRKARIAERL DALHGLLPSP KEGSKDSLID DIIDHIKYLQ  120
LQVKGFGHYL LHEQMNEPLE EMMGRLLEVN PSAATQLLAS QGLLIMPTDL AEGLHQVDHP  180
PENKLKCRGN NVENDDLDNN EDMGGDDFGN DDDLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086748.11e-56transcription factor bHLH66-like isoform X3
TrEMBLA0A2R6QU261e-92A0A2R6QU26_ACTCH; Transcription factor bHLH7 like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.16e-16LJRHL1-like 2