PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn309341

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 242aa MW: 26411.4 Da PI: 5.6106

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn309341	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	192	228	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ L+ ++P + +++ +++L +Av+Y+ksL Achn309341 192 RQKMKKMVKVLQGIVPGgN------RMNTVAVLDEAVRYLKSL 228 7899999999999999855......9***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.601	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-4	186	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.68E-6	189	233	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-7	190	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-8	190	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MQSDQQLFPS NPAFPISPIS NQVGGSYMHN APDASAFGGP ILPTGLKHSG PIHGIEFQPS 60 EVCPKNFIIF DQSQNRSQIM FHPVIAPQFC YPGFNIPSYI HDNVEREANT EKEAHSSLRE 120 DSADIDALLS LEEEEQEECD EEEVSTARTH GDYGSDSSDS CSSYGSKPKK SRLSTSQKSS 180 GSGNSCNSER KRQKMKKMVK VLQGIVPGGN RMNTVAVLDE AVRYLKSLKI EAQKLGVTNL 240 S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028100467.1	1e-112	transcription factor bHLH144
TrEMBL	A0A2R6QAG2	1e-176	A0A2R6QAG2_ACTCH; Transcription factor bHLH144 like
STRING	XP_002519719.1	1e-91	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8124	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	9e-20	bHLH family protein