PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn310851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 329aa    MW: 36657.2 Da    PI: 7.5011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn310851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-06123142626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C++f++ G C+ Gd C  aHg
  Achn310851 123 CPDFRK-GNCRKGDACEQAHG 142
                 ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.5E-4117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.789118144IPR000571Zinc finger, CCCH-type
SMARTSM0035616152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMIGERNHNF NPTVHVPPWP LLDDPTVDAS LPYHNGNTDD FSPLDALTAL HRNQPSNDSD  60
SDSDESDHPV DAYSCDHFRM YEFKVRMCTR GRSHDWTDCP YAHPGEKARR RDPRKYHYSG  120
TSCPDFRKGN CRKGDACEQA HGVFECWLHP ARYRTQPCKD GTHCLRRVCF FAHSPEQLRV  180
LSPRTPGSGS PPSESPPLSP MTNSLNRSLG SNSVNEMVAS LRQLQLNKVK SMPCSWGFQI  240
GGSGFGSPTL AMTRPGFCSL PSTPTRAVTR PEIGPQLMVE PVMERVESGR DLRAKMFEKL  300
SRENPLDLGD PKPPSPGPDL GWVSELVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058693.11e-168zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-121C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2R6Q5000.0A0A2R6Q500_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009608132.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-116C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]