PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn311101
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 78aa    MW: 8587.7 Da    PI: 4.7107
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn311101genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-101649133
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.T CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.k 33
                     rg+WT+eEd ll+++++ +G g W++ a+  g  
       Achn311101 16 RGPWTPEEDTLLIHYIACHGEGKWNLLAKFAGsS 49
                     89***************************99855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.4421160IPR017930Myb domain
SuperFamilySSF466892.44E-101256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-111447IPR009057Homeodomain-like
PfamPF002495.4E-91652IPR001005SANT/Myb domain
CDDcd001671.17E-61848No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MAVVSNASEE EFELRRGPWT PEEDTLLIHY IACHGEGKWN LLAKFAGSSH RMPFSLDPVS  60
ININVLNIGI EDAAKYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069709.11e-20transcription factor MYB62-like
TrEMBLA0A2R6PBA53e-25A0A2R6PBA5_ACTCH; Transcription factor like
STRINGVIT_01s0011g03730.t012e-17(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.24e-15myb domain protein 116