PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn311531
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 395aa    MW: 44790.1 Da    PI: 6.5168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn311531genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.67e-55131421129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 lppGfrFhPtdee++++yL++kv ++++++  +++evd++k+ePwdLpk++k ++kewyfF++rd+ky+tg r+nratksgyW+atgkdke+++   ++
  Achn311531  13 LPPGFRFHPTDEEIITDYLTEKVMNTTFTA-IALTEVDLNKTEPWDLPKQAKIGKKEWYFFFRRDRKYPTGMRTNRATKSGYWNATGKDKEIYKGkkGN 110
                 79*************************999.88***************99999****************************************974444 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                  l+g+kktLvfykgrapkgekt+Wvmheyrle
  Achn311531 111 CLIGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142
                 55****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-618167IPR003441NAC domain
PROSITE profilePS5100558.86413166IPR003441NAC domain
PfamPF023651.9E-2814141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEEGDDGRNI MGLPPGFRFH PTDEEIITDY LTEKVMNTTF TAIALTEVDL NKTEPWDLPK  60
QAKIGKKEWY FFFRRDRKYP TGMRTNRATK SGYWNATGKD KEIYKGKKGN CLIGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKFSYHSF PKPAKDEWVV CRVFHKNTGI KSSSPITRMN  180
SFAMDDLLRS PDSLPPLIDP PPPYSNNDRL AGCSSFTEYN EDDHDIKGKA TISSSSVARS  240
PDGGDYFSYL NNDHITYRMP HDSSYQARLG YSTHDSTFYP QIQVANPNFR FQASPDDLIG  300
YAHQESMGVL VPNFSRWTSY MKPDQAILRS ATHEESHGNM TTGSEITSSG LEISKKDVGS  360
SAISSMRSYD DQDLEEPSVG ILDPISDLDY LLHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-491116815167NO APICAL MERISTEM PROTEIN
1ut4_B5e-491116815167NO APICAL MERISTEM PROTEIN
1ut7_A5e-491116815167NO APICAL MERISTEM PROTEIN
1ut7_B5e-491116815167NO APICAL MERISTEM PROTEIN
3swm_A6e-491116818170NAC domain-containing protein 19
3swm_B6e-491116818170NAC domain-containing protein 19
3swm_C6e-491116818170NAC domain-containing protein 19
3swm_D6e-491116818170NAC domain-containing protein 19
3swp_A6e-491116818170NAC domain-containing protein 19
3swp_B6e-491116818170NAC domain-containing protein 19
3swp_C6e-491116818170NAC domain-containing protein 19
3swp_D6e-491116818170NAC domain-containing protein 19
4dul_A5e-491116815167NAC domain-containing protein 19
4dul_B5e-491116815167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277068.11e-124PREDICTED: NAC domain-containing protein 92
RefseqXP_010653830.11e-124PREDICTED: NAC domain-containing protein 92
TrEMBLA0A2R6R5190.0A0A2R6R519_ACTCH; NAC domain-containing protein
STRINGVIT_08s0007g07640.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.12e-96Arabidopsis NAC domain containing protein 87