PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn311581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 242aa    MW: 27733.9 Da    PI: 4.6641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn311581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-077282345
                     -HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45
                     +W+ Ia+ ++ gRt++++k++w+
       Achn311581  7 RWSIIAAQLP-GRTDNNIKNYWN 28
                     4*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.165135IPR017930Myb domain
CDDcd001671.69E-4228No hitNo description
SuperFamilySSF466899.79E-7635IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-10632IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEYIMSRWSI IAAQLPGRTD NNIKNYWNAR LKKKWLERRK QFTADRLSKP FHPNGVEDDS  60
CAPILSNSTL ERLQLYMHLQ GLQNPFSSYN NTVLLPKLNP LQEKMVQTPK FFNQSTNTLV  120
QPEHEQKFDL HEPITKQEYL EIGNPKIDDQ LGNSSWDIGS NLPDSNIEKV STFQNELIDG  180
LINNKAIGFP SQEDSIAQID CFTEMEGLKE SMVWWSSDHD LENSNSASSS SWDYGLGYDL  240
Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083497.15e-68transcription factor MYB36-like
RefseqXP_028089083.15e-68transcription factor MYB36-like
TrEMBLA0A2R6R5021e-172A0A2R6R502_ACTCH; Transcription factor like
STRINGEOY317644e-57(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-28myb domain protein 36