PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn311801

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 235aa MW: 26972.4 Da PI: 9.2204

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn311801	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.8	9.1e-32	13	90	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s +++ vg+kk Lvfykg+ pkg ktdW+mheyrl Achn311801 13 KAEFGENEWYFFTPRDRKYPNGARPNRAAVSGYWKATGTDKSIHS-GSKYVGVKKALVFYKGKPPKGIKTDWIMHEYRL 90 4556899************************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.536	1	118	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-39	14	118	IPR003441	NAC domain
Pfam	PF02365	4.9E-15	19	90	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MNAQNKPTIR EEKAEFGENE WYFFTPRDRK YPNGARPNRA AVSGYWKATG TDKSIHSGSK 60 YVGVKKALVF YKGKPPKGIK TDWIMHEYRL ISDSPRQIIK QKGSMRLDDW VLCRIYKKKN 120 MGRAEEQKVE DSSPQTVTTN DTTITHSQTL NFPRTYSLSH LWELGCLGPL PQLLSDYSSN 180 SIFDNHQDNM GNSGIEFCSI EKIQSGELPF QYMDSVKFQD NHNQPIFANP LFQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	7	120	59	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	7	120	59	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	7	120	59	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	7	120	59	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-49	7	120	62	170	NAC domain-containing protein 19
3swm_B	3e-49	7	120	62	170	NAC domain-containing protein 19
3swm_C	3e-49	7	120	62	170	NAC domain-containing protein 19
3swm_D	3e-49	7	120	62	170	NAC domain-containing protein 19
3swp_A	3e-49	7	120	62	170	NAC domain-containing protein 19
3swp_B	3e-49	7	120	62	170	NAC domain-containing protein 19
3swp_C	3e-49	7	120	62	170	NAC domain-containing protein 19
3swp_D	3e-49	7	120	62	170	NAC domain-containing protein 19
4dul_A	2e-49	7	120	59	167	NAC domain-containing protein 19
4dul_B	2e-49	7	120	59	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028086269.1	1e-114	NAC domain-containing protein 2-like
Swissprot	K4BWV2	2e-85	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A2R6P412	1e-166	A0A2R6P412_ACTCH; NAC transcription factor
STRING	VIT_01s0026g02710.t01	9e-93	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-69	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]