PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn311891

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 195aa MW: 20574.2 Da PI: 7.1283

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn311891	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.7	1e-34	30	105	3	81
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 k ++ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ + ++ + + Achn311891 30 RKSGSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPTAAVstS-----TA 105 5667889********************************************************66665333111.....11 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-30	34	122	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.746	35	89	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MVLQFSSHDS SPQNHTAIAT ATAVTVTPAR KSGSSRDRHT KVNGRGRRVR MPALCAARIF 60 QLTRELGHRS DGETIEWLLR HAEPSIIAAT GTGTVPTAAV STSTAAPLSS TSASLSAFSS 120 IAQPAASVPG GYVTPAMFAV APPSCRLDLC PPPSMGFEFS SNGYRHMPFT ALLLQPAVDD 180 AEDREEEVLE EQKI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028053292.1	9e-70	transcription factor TCP11-like
Swissprot	Q9SJK7	2e-41	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A2R6Q9M1	1e-104	A0A2R6Q9M1_ACTCH; Transcription factor like
STRING	VIT_08s0040g01600.t01	4e-66	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	4e-36	TCP family protein