PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 305aa    MW: 33064.9 Da    PI: 6.7785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-057698123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  Achn313231 76 YTCTFCRREFKSAQALGGHMNVH 98
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.6E-673102No hitNo description
PROSITE profilePS5015711.09476103IPR007087Zinc finger, C2H2
PfamPF139123.0E-57699IPR007087Zinc finger, C2H2
SMARTSM003550.00577698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
PfamPF139120.011162179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAADLGLLSL THPQNISHSK QQNHQTSNPN PSYTTTGSWM WNTKLASAED DEEWEVRAFE  60
EDTNHAMGTT WPPRSYTCTF CRREFKSAQA LGGHMNVHRR DRAKLHQGPP SAAVATSSAL  120
LIPTQEFMAN GGFCFLYSLS NPNQCLDSLS TLLSIAPNPP NKREFKSAQA LGGHMNVHRR  180
DRAKLHQGPP SAAVATSSAL LIPTQEFMAN GGFCFLYSLS NPNQCLDSLS TLLSIAPNPP  240
NKSLSPNCPP CISFPVASPS VNSSLCHSSN TEPSAPIDNE DNHTNNGPAI NEELDLELRL  300
GRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-127198229superman protein
2l1o_A2e-127198229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811460.12e-63PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2R6PMG12e-95A0A2R6PMG1_ACTCH; Transcriptional regulator SUPERMAN like
STRINGEOY240173e-57(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-34C2H2 family protein