PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 797aa    MW: 88595.6 Da    PI: 5.4113
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.95.5e-16721121656
                 HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Achn313451  72 DRMFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 112
                 689***********************************998 PP
2START155.64.1e-492554802206
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                 la + ++elvk+ + +ep+W +    eng+e l  +e ++               + ea r+++vv+m++ +lv  +ld + +W+e ++    +a+tl+
  Achn313451 255 LAMSSMDELVKMCQISEPLWIRNN--ENGKEMLNFEEHARMfqwsmslrenpneLRREATRDTAVVIMNSITLVDAFLDAN-KWTELFPsiisRAKTLQ 350
                 67789*****************99..888888777776666888888*******9**************************.***************** PP

                 EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
       START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                  ++sg      g l+lm+aelqalsplvp R+  f+Ry++q  ++g+w+ivd  ++s +++  ++s+ R +++pSg++i++++ng+s+vtwveh ++++
  Achn313451 351 IVTSGvsghasGSLHLMYAELQALSPLVPtRETHFLRYCQQnAEEGTWAIVDFPLESFNENF-QASLPRYKRRPSGCIIQDMPNGYSRVTWVEHGEVED 448
                 ****************************************************6666666665.9*********************************** PP

                 SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                 + +h l+ +lv+sg+a+ga +w+a l+rqce+
  Achn313451 449 KPVHPLFDPLVNSGMAFGAHRWLAVLRRQCER 480
                 ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-1929120IPR009057Homeodomain-like
CDDcd000862.01E-1436115No hitNo description
SMARTSM003893.8E-1256118IPR001356Homeobox domain
SuperFamilySSF466897.52E-1463115IPR009057Homeodomain-like
PROSITE profilePS5007114.4371114IPR001356Homeobox domain
PfamPF000461.8E-1372112IPR001356Homeobox domain
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PROSITE profilePS5084846.999245483IPR002913START domain
SuperFamilySSF559611.59E-33246482No hitNo description
CDDcd088756.47E-114249479No hitNo description
SMARTSM002342.6E-35254480IPR002913START domain
PfamPF018523.4E-41255480IPR002913START domain
SuperFamilySSF559611.76E-15498693No hitNo description
SuperFamilySSF559611.76E-15721759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MVMMRGKEEI ESGSGSEHME GVSGNEQESE QQQPKKKRYH RHTARQIQEM EAISELEVVM  60
LTYAPVHHKL FDRMFKECPH PDDKQRLKLS QELGLKPRQV KFWFQNRRTQ MKAQHDRQDN  120
VILRAENENL KNENYRLQAA LRSILCPNCG GPAMLGEMGY DEQQLRIENA RLKEEFERVC  180
CLASRYSGRS IQSMGMEPPM LAPSLDLDMS IYPRHFQDSM GNCEEMIPMP LMPDNSHFPS  240
CDLIMEEEKQ PALELAMSSM DELVKMCQIS EPLWIRNNEN GKEMLNFEEH ARMFQWSMSL  300
RENPNELRRE ATRDTAVVIM NSITLVDAFL DANKWTELFP SIISRAKTLQ IVTSGVSGHA  360
SGSLHLMYAE LQALSPLVPT RETHFLRYCQ QNAEEGTWAI VDFPLESFNE NFQASLPRYK  420
RRPSGCIIQD MPNGYSRVTW VEHGEVEDKP VHPLFDPLVN SGMAFGAHRW LAVLRRQCER  480
LASLMARNIS DLGVIPSPEA RKNLMNLTQR MIRTFCVNIS TSWGQSWTAL SDSADDTVRI  540
TTRKVTEPGQ PHGLILSAVS TTWLPHSHNH VFDLLRDEHR RAQFDYIGAA NSVVFMLWQL  600
DVLSNGNSLH EVAHIANGSH PGNCISLLRI NVASNSSQNV ELMLQESCTD ESGSLVVYAT  660
VNVDAIQLAM STEDPSCIPL LPLGFVIIPV GPASTATDPN GVVSQIPADS GAENQSDSGG  720
GCLLTVGLQV LASTVPTAKL NLSSVTAINN LLCNTVHQIN TALIGGGGGG CLNNGGIVGS  780
SAEPVAVEAA PPDLTD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083900.10.0homeobox-leucine zipper protein ROC3
RefseqXP_028083901.10.0homeobox-leucine zipper protein ROC3
RefseqXP_028083902.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2R6PND80.0A0A2R6PND8_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_02s0012g02030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7