PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 161aa    MW: 18417.1 Da    PI: 10.6845
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.6e-2357119163
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                 +W+++e+++Li++r e+e+++  +k++k+lWe vs++mre g++r++ qCk+kw+ l +ryk+
  Achn313581  57 QWSHRETRDLIAIRAELERDFTVAKRNKTLWEVVSARMRELGYRRTADQCKCKWKTLVNRYKE 119
                 7************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.44550114IPR017877Myb-like domain
PfamPF138371.2E-1757119No hitNo description
Gene3DG3DSA:1.10.10.603.0E-457116IPR009057Homeodomain-like
CDDcd122032.34E-2757119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MNFSGGGGRG SVGGGRENDF LQMMMMPLPL HRNPMPEAAE IGGGDGEFPK RDERVLQWSH  60
RETRDLIAIR AELERDFTVA KRNKTLWEVV SARMRELGYR RTADQCKCKW KTLVNRYKEG  120
GVELTLKTRV TRRGNFPPYK QAQKLELQGE GTFHLINRPR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614GGRGSVGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064442.12e-48trihelix transcription factor GT-3b-like
RefseqXP_028064443.12e-48trihelix transcription factor GT-3b-like
RefseqXP_028064444.12e-48trihelix transcription factor GT-3b-like
TrEMBLA0A2R6PMM45e-82A0A2R6PMM4_ACTCH; Trihelix transcription factor GT-3a like
STRINGXP_010276957.15e-37(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-22Trihelix family protein