PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARR-B
Protein Properties Length: 426aa    MW: 48407.4 Da    PI: 5.9444
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.61.7e-15202257155
     G2-like   1 kprlrWtpeLHerFveaveq..LGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ e+  + +  v+q  L     A+Pk+ilelm+++gLt+e+v+SHLQk+Rl
  Achn313881 202 KPRVVWSVEMNWKMMIPVQQrsL-VLCDAVPKRILELMNIPGLTRENVASHLQKFRL 257
                 79999999999999999998444.4578****************************8 PP
2Response_reg78.62.1e-26191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   v++vdD+ + +++l+q+l++  y +v+++++++ al+ll+e++  +D+il D+ mp+mdG++ll+     e++lp+i+++a g  + + + ++ Ga 
    Achn313881  19 VFVVDDDITCLRILQQMLRRCMY-RVTTCSQATVALNLLRERKgcFDVILSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIRHGAC 113
                   89*********************.****************************************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
    Achn313881 114 DYLIKPIREEELKN 127
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.38E-3416141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-4116156No hitNo description
SMARTSM004481.0E-2917129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.93818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-2319127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.26E-2620132No hitNo description
SuperFamilySSF466896.99E-12199261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-17200262IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-12202257IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MACKAELVVS DQFPAGLRVF VVDDDITCLR ILQQMLRRCM YRVTTCSQAT VALNLLRERK  60
GCFDVILSDV HMPDMDGFKL LELVGLEMDL PVIMMSADGR TSAVMRGIRH GACDYLIKPI  120
REEELKNIWQ HVRKKWNENK EQEHSGSLHD IDQHKQGSDD TEYGFSANEG AEELLKTQKN  180
RRDAKEEDND ELENDDPSTA KKPRVVWSVE MNWKMMIPVQ QRSLVLCDAV PKRILELMNI  240
PGLTRENVAS HLQKFRLYLK RLSGVAQQEG GFPNSYCGPV EQNAKAVNTC FPINGALRVL  300
GSGPVLSTRC RARRRVRYND KDDEEEEYGH NADIAMLELY SQSARDEVLL VRALVDNQEV  360
EVLIFKGFSS CLSYKTSPDP SRSVLPERAV IKSIDKIKGP FDPSNIEYLE KGLAWEIFKS  420
RLDPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-14198263164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651276.11e-164PREDICTED: two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-109ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A2R6QQG60.0A0A2R6QQG6_ACTCH; Two-component response regulator like
STRINGVIT_01s0011g05830.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-93response regulator 14