PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn313941

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 246aa MW: 27129.2 Da PI: 8.1191

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn313941	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Achn313941 90 FSCNYCRRKFYSSQALGGHQNAH 112 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.82E-6	87	117	No hit	No description
PROSITE profile	PS50157	11.385	90	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MKRPSINLES KDDSEVSGQI PTHISNQEIS HDPSKDSATT SSCLSNPIKY QTDPGPVTLD 60 LTLRFDSRDV ESKGKGETSN ELAAQPSRVF SCNYCRRKFY SSQALGGHQN AHKRERTLAK 120 RAMRMGMLTD RYASLASLPL HGSTFRSLGI EAHASVHQRI LPYTRPFPEI RGGARFEQSY 180 FGSPIFVDDD EAELFWPGSF RQIGEGVHHN VVFNSGQSSN INFVAMAPPP RTDNSSSSPD 240 LALKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028080117.1	1e-112	zinc finger protein 4-like
Refseq	XP_028080118.1	1e-112	zinc finger protein 4-like
Refseq	XP_028080119.1	1e-112	zinc finger protein 4-like
Refseq	XP_028080120.1	1e-112	zinc finger protein 4-like
Refseq	XP_028080122.1	1e-112	zinc finger protein 4-like
Refseq	XP_028080123.1	1e-112	zinc finger protein 4-like
Swissprot	Q39263	4e-46	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A2R6QQJ2	0.0	A0A2R6QQJ2_ACTCH; Zinc finger protein
STRING	XP_009768278.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-48	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]