PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn314121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 202aa    MW: 22665.1 Da    PI: 5.2114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn314121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.3e-0977102132
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfs 32 
                 ++++GVr+++ +grW+AeIrdp     ++r +
  Achn314121  77 KKFRGVRRRP-WGRWAAEIRDP-----TRRKR 102
                 59********.**********9.....44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.35E-1277115No hitNo description
SMARTSM003804.1E-978119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-978103IPR001471AP2/ERF domain
PfamPF008477.4E-578102IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-778113IPR016177DNA-binding domain
PROSITE profilePS5103211.40378103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTSGDSSTAF RRRVVRVIFT DADATDSSGD DEEQAVRRVK RLVKEININP SPNKREQSKK  60
RRIGSLGSAG SDASRRKKFR GVRRRPWGRW AAEIRDPTRR KRLKGPDAVT NFPNVTVTEK  120
AVHVKTDGEG SDNVAALSPT SVLLYDELTP FDEFSYGDVD AFGFDIDMPL RLADFTVPEY  180
LYGDDDLGEE FNLDDFLVDD R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17484RRKKFRGVRRR
282101RRRPWGRWAAEIRDPTRRKR
382103RRRPWGRWAAEIRDPTRRKRLK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078710.15e-68pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-45PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2R6QJI81e-134A0A2R6QJI8_ACTCH; Pathogenesis-related transcriptional activator like
STRINGXP_009607079.11e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-09cytokinin response factor 4