PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn314261

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 486aa MW: 53740.2 Da PI: 8.6774

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn314261	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.1	2.3e-41	306	405	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r+da++slvyeA++r+ dPvyG++g i++lqqq+++l+ael+++++ Achn314261 306 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRPDAANSLVYEANVRLGDPVYGCMGAISALQQQVQSLQAELNAVRA 404 7***********************************************************************************************998 PP DUF260 100 e 100 e Achn314261 405 E 405 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.888	305	406	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-41	306	403	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MLMESSDLRE NSIKFEQGKK FSSRRMCRET SVIDSVVEVY YGGASGSVPF HWESQPGTPK 60 VKLLVKPVPP VLTPPPLSFH FYSTRKPIKK PSKPTLVHAI LYKLLGRKTS RPLSRSSSSS 120 TSFSLLSSSW SSFRSVPSSL FPDPNVPRKS QLPSPGSSFC SRIGEEEQYE SPILCFGRTN 180 SWSRASFDFD DDQIWHGAYS IQWSARGEED DESTLAELVG SAMLLWQGQT GHELDLTRGI 240 MSLAVSPIYL DERRKLWYKR EFEVVRERFD EIGKKIKREI DALSQMGRRQ ILGGHPPGMN 300 LNTITPCAAC KLLRRRCAEE CPFSPYFSPH EPHKFAAVHK VFGASNVSKM LMEVPESQRP 360 DAANSLVYEA NVRLGDPVYG CMGAISALQQ QVQSLQAELN AVRAEILRLK YRETANNIIA 420 STHAALATPH AVSVAVLQPP SAPPPPLPPS VVVSSSEGSS NLYNPMPAST MGYNSIPSDG 480 VPYFD*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MLMESSDLRE NSIKFEQGKK FSSRRMCRET SVIDSVVEVY YGGASGSVPF HWESQPGTPK  60
VKLLVKPVPP VLTPPPLSFH FYSTRKPIKK PSKPTLVHAI LYKLLGRKTS RPLSRSSSSS  120
TSFSLLSSSW SSFRSVPSSL FPDPNVPRKS QLPSPGSSFC SRIGEEEQYE SPILCFGRTN  180
SWSRASFDFD DDQIWHGAYS IQWSARGEED DESTLAELVG SAMLLWQGQT GHELDLTRGI  240
MSLAVSPIYL DERRKLWYKR EFEVVRERFD EIGKKIKREI DALSQMGRRQ ILGGHPPGMN  300
LNTITPCAAC KLLRRRCAEE CPFSPYFSPH EPHKFAAVHK VFGASNVSKM LMEVPESQRP  360
DAANSLVYEA NVRLGDPVYG CMGAISALQQ QVQSLQAELN AVRAEILRLK YRETANNIIA  420
STHAALATPH AVSVAVLQPP SAPPPPLPPS VVVSSSEGSS NLYNPMPAST MGYNSIPSDG  480
VPYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	306	408	11	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	306	408	11	113	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-69	LOB domain-containing protein 15