PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn314301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 689aa    MW: 76020 Da    PI: 7.8751
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn314301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33344401260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Achn314301 344 EDGYNWRKYGQKQVKGSENPRSYYKCTFQNCPTKKKVERSL-DGQITEIVYKGNHNHPK 401
                 7****************************************.***************85 PP
2WRKY105.23.5e-33512570159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  Achn314301 512 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 570
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28333402IPR003657WRKY domain
PROSITE profilePS5081123.973338402IPR003657WRKY domain
SuperFamilySSF1182902.22E-25339402IPR003657WRKY domain
SMARTSM007748.8E-37343401IPR003657WRKY domain
PfamPF031062.3E-25344400IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-37497572IPR003657WRKY domain
SuperFamilySSF1182903.92E-29504572IPR003657WRKY domain
PROSITE profilePS5081138.377507572IPR003657WRKY domain
SMARTSM007743.1E-39512571IPR003657WRKY domain
PfamPF031061.2E-25513570IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MCMHDNLDSV VQIAPKMTFS VSAGTFLTSR FNPLYAFLGF YESFINLSYF SVIDSGLLAP  60
ASISGCFDSK WSCSCPVGTW STYRSEAPDI VNVLHLSLIT LKLLVVCSSR GIKHFSLDTS  120
GNSHPQPPPP SHFSFMSSSA NNTSFSDLLA GDYPSAAPVS RGLSDRIAER SGSGVPKFKS  180
ITPPSLPISP PPISPFSYFA IPPGLSPAEL LDSPVLLSTS NVLPSPTTGS FPTHAFNWKS  240
NSNHYHNQRS VKQEQKNFSD FSFHSQKGPP TSSATSFQSQ VPAENKTWGF QETTKQVKPE  300
SASMQSFSPE ISTIQNNSQS GFQSDYNNHY NQSSQSIREQ RRSEDGYNWR KYGQKQVKGS  360
ENPRSYYKCT FQNCPTKKKV ERSLDGQITE IVYKGNHNHP KPQSTRRSAA AASSQAIQPH  420
TNEIPDQSYA SHGNGPMDSV ATPEISSISM GDDDYDQNSQ KSKSGGDEFD EEEPDAKRWK  480
IEGESEGISA PGSRTVREPR VVVQTTSDID ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN  540
PGCPVRKHVE RASHDLRAVI TTYEGKHNHD VPAARGSGSH SVNRPLPTAT TTNHHHHQQA  600
TAIRPSPMFH HSSTHAMANP IRNSRLQAPD QGQAPFTLEM LQSPGSFGFS GFENSMGSYM  660
NQNQLADNVF SRTKEEPRDD LFVESLLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37335573878Probable WRKY transcription factor 4
2lex_A5e-37335573878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051918.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-134WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2R6QJE60.0A0A2R6QJE6_ACTCH; WRKY transcription factor
STRINGEOY346310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-106WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]