PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn314821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 197aa    MW: 21416.4 Da    PI: 7.7219
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn314821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.3e-40101101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++Cv+apyf ++q p++fa+vhk+FGasn +k+l ++p ++r da+ sl+yeA ar+rdPvyG+vg+i++lqqq+ +l++ela+++
  Achn314821  10 PCGACKFLRRKCLRECVFAPYFDSDQgPSHFAAVHKVFGASNASKMLLRVPAHKRLDAVVSLCYEALARVRDPVYGCVGHIFTLQQQVVNLQVELAYTQ 108
                 7***********************9999********************************************************************998 PP

      DUF260  99 ee 100
                 ++
  Achn314821 109 AR 110
                 76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.329111IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-3910108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGSNNSGAGP CGACKFLRRK CLRECVFAPY FDSDQGPSHF AAVHKVFGAS NASKMLLRVP  60
AHKRLDAVVS LCYEALARVR DPVYGCVGHI FTLQQQVVNL QVELAYTQAR LSTLQCLPLP  120
PLPQPQSPSQ ANLQFSSQMA LTSNAPTHFD ASTSMELVSF CNAMDQEFED GDLQAIAREF  180
VSRYLSGVKV QPSNSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3841234123LOB family transfactor Ramosa2.1
5ly0_B2e-3841234123LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021657345.11e-92LOB domain-containing protein 19-like
SwissprotO813223e-70LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2R6RIZ61e-143A0A2R6RIZ6_ACTCH; LOB domain-containing protein
STRINGEOX961949e-91(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-55LOB domain-containing protein 31