PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn315081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 202aa    MW: 21675.3 Da    PI: 4.5449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn315081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011176198223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+++F++   L++H +  H
  Achn315081 176 SCNSCNRTFNSDKALESHSKAkH 198
                 6*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.45175201IPR007087Zinc finger, C2H2
PROSITE patternPS000280177198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEFWGSEDSD EGEDNVFGIT ENGKIESKVE PKPVANKGKP AKPESSSKPK VTVVEPKKDE  60
SDDEESEDED ELDVGMMAAS DDSDSEDEDD SDKDDSESED EETPKKAEPG KKRPTESATK  120
TPVPAKKAKL ETPQKTDGKK GGGHTATPYP SKQAGKNPAT SNKSKDQTQK SEGKVSCNSC  180
NRTFNSDKAL ESHSKAKHAA K*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063559.12e-50histone deacetylase HDT1-like
RefseqXP_028069875.12e-50histone deacetylase HDT1-like isoform X2
SwissprotQ6V9I68e-31HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A2R6QT601e-129A0A2R6QT60_ACTCH; Histone deacetylase
STRINGVIT_03s0132g00020.t017e-42(Vitis vinifera)
STRINGVIT_06s0061g01240.t012e-40(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-17histone deacetylase 2C
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]