PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn316681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ZF-HD

Protein Properties

Length: 128aa MW: 13838.1 Da PI: 4.4676

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn316681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	41.4	3.3e-13	9	52	5	53
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFH 53 +Y C +N ++G + vDGCg f ++ + +++C ACgC +FH Achn316681 9 EYGACWRNFGGEVGRYIVDGCGQFAQD-----AQGSTNCEACGCDNSFH 52 79********************998.....45799********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.5E-11	9	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-4	10	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	14.959	10	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MEGERFFLEY GACWRNFGGE VGRYIVDGCG QFAQDAQGST NCEACGCDNS FHLTLTLTLT 60 LTHINIHDNN GIGGRAPQPS HSQESVITEV ENNVTTPLVD DDYDEVSCAE KSTDSSGSNK 120 KKKKNIT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14687.1	2e-07	homeobox protein 32