PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn317161
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 209aa    MW: 22309.2 Da    PI: 5.092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn317161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-165097355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r  +++g+Wv+eIr+p++   ++r++lg++ ++e+Aa+a++ a+++l+g
  Achn317161 50 YRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPSPEMAAAAYDVAALALKG 97
                99**6..678*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-2549106IPR001471AP2/ERF domain
SMARTSM003805.4E-2649111IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1749106IPR016177DNA-binding domain
PROSITE profilePS5103219.90249105IPR001471AP2/ERF domain
PfamPF008472.4E-95097IPR001471AP2/ERF domain
CDDcd000184.44E-1550106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MCQQEQSPSQ HSISITTTNI ECENALSPKT GKILPLTAAS STATRKHPMY RGIRSRSGKW  60
VSEIREPRKT TRIWLGTYPS PEMAAAAYDV AALALKGSDV IINFPEKVKS YPVPETKSPA  120
DIRAAAAAAA ALMKAGSSEN PLGNRDSTAG VASAAPGDEF IDEEALFDMP SLLVGMAEGM  180
LMSPPRMHSP RPEDTPENSD GESLWSYD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278525.13e-68PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_028107643.14e-68ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2R6QNE71e-149A0A2R6QNE7_ACTCH; Ethylene-responsive transcription factor
STRINGXP_010278525.11e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-49ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]