PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn317751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 479aa    MW: 53452.6 Da    PI: 9.1967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn317751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-0877129155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 r++ h  +Er+RR+++      L++ lP+      ++K s ++ + + v+YI++Lq
  Achn317751  77 RKMIHRDIERQRRREMAILHRSLKSTLPPeY---IKGKRSISDHVHESVNYIRHLQ 129
                 6788*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-975144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.41E-775133No hitNo description
Gene3DG3DSA:4.10.280.103.5E-676125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.41176128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-677129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-4126148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5084214.884252383IPR007112Expansin/pollen allergen, DPBB domain
SMARTSM008374.9E-22285373IPR007112Expansin/pollen allergen, DPBB domain
PfamPF033301.2E-12320373IPR009009RlpA-like protein, double-psi beta-barrel domain
SuperFamilySSF506852.96E-26322401IPR009009RlpA-like protein, double-psi beta-barrel domain
Gene3DG3DSA:2.40.40.101.3E-16322377IPR009009RlpA-like protein, double-psi beta-barrel domain
PRINTSPR012268.4E-36322332IPR002963Expansin
PRINTSPR012268.4E-36341358IPR002963Expansin
PRINTSPR012268.4E-36358371IPR002963Expansin
PRINTSPR012251.0E-12366382IPR007118Expansin/Lol pI
Gene3DG3DSA:2.60.40.7601.7E-26378477IPR007117Expansin, cellulose-binding-like domain
SuperFamilySSF495902.75E-26380472IPR007117Expansin, cellulose-binding-like domain
PRINTSPR012268.4E-36382394IPR002963Expansin
PfamPF013572.1E-20389462IPR007117Expansin, cellulose-binding-like domain
PROSITE profilePS5084320.86393473IPR007117Expansin, cellulose-binding-like domain
PRINTSPR012268.4E-36394415IPR002963Expansin
PRINTSPR012251.0E-12420434IPR007118Expansin/Lol pI
PRINTSPR012251.0E-12459473IPR007118Expansin/Lol pI
PRINTSPR012268.4E-36459475IPR002963Expansin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009664Biological Processplant-type cell wall organization
GO:0005576Cellular Componentextracellular region
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDFASSLFPY VQNDELFQFS SIPFQHNHPI FQQDSLLVTT TSLSNSGEPE DGGRRQKSSL  60
AFDDNNIDEN PSDHKRRKMI HRDIERQRRR EMAILHRSLK STLPPEYIKG KRSISDHVHE  120
SVNYIRHLQK RAEKLSEKRD GLKRLPNKNT ANDDGSKVFP STSRKDISVT IETSGERVRI  180
ILRGGWSLSK ALDVLIQEGL TITSCISTNV NERLLHTIES EGPCPNCGAE NVSFFRTILS  240
IYNGGSTNTD KCWNCGTEMV YDSRTRLVTL PEGSKACLEE ELVGTETCST LDMGPTQRLL  300
ARPCSTMAML VGVATRSRYP LTTVTATNLC PPNWAQDSNN GGWCNPPRTH FDMSKPAFMK  360
IAQWKAGIVP VMYRRVPCVR QGGLQLAFQG NGYWLLVYVM NVGGGGDVSG MWVKGTKTGW  420
ISMSHNWGAS YQAFATLSGQ ALSFKVTSYT TKQTLKAYNV APSNWNVGMT YKANVNFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027193366.11e-104PGR5-like protein 1B, chloroplastic isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-29bHLH family protein