PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn318871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 591aa    MW: 64678.6 Da    PI: 6.6082
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn318871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +rienk+nrqvtfskRrng+lKKA+ELS LCda+va+iifss+gkl e+ 
  Achn318871  9 ERIENKINRQVTFSKRRNGLLKKAFELSLLCDADVALIIFSSRGKLSEFG 58
                69**********************************************95 PP
2K-box54.54.9e-19951573395
       K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                  + Rhl+GedL+sL + eLq+Le+qL+++l k R+kK++l+le +e l+ k +e++e+ +a+r
  Achn318871  95 LSRRHLQGEDLGSLGVDELQNLEKQLDRALGKAREKKTQLMLERMEALRVKLEEVEERVRAIR 157
                 567*****************************************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.726161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002658.66E-41272No hitNo description
SuperFamilySSF554558.37E-32285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.43176169IPR002487Transcription factor, K-box
PfamPF014863.4E-1496155IPR002487Transcription factor, K-box
Gene3DG3DSA:3.40.1190.205.6E-77183505IPR029056Ribokinase-like
SuperFamilySSF536133.7E-65185506IPR029056Ribokinase-like
CDDcd011671.34E-98188493No hitNo description
PfamPF002944.2E-54188506IPR011611Carbohydrate kinase PfkB
PROSITE patternPS005830215239IPR002173Carbohydrate/puine kinase, PfkB, conserved site
PROSITE patternPS005840481494IPR002173Carbohydrate/puine kinase, PfkB, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016773Molecular Functionphosphotransferase activity, alcohol group as acceptor
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MGRGKVVLER IENKINRQVT FSKRRNGLLK KAFELSLLCD ADVALIIFSS RGKLSEFGSS  60
SISQTIERYR QYCYTPQDNI EHEQQVWALS FSLCLSRRHL QGEDLGSLGV DELQNLEKQL  120
DRALGKAREK KTQLMLERME ALRVKLEEVE ERVRAIRSLQ CDIAAVGNNG IWVQTSQFNP  180
IEPETLQIGE MLIDFVPTVG GVSLAEAPAF KKVPGGAPAN VAVGIARLGG SSAFIGKVGE  240
DEFGYMLTDI LKQNKVNNCG VRFDPSARTA LAFVTLGADG EREFLFFRNP SADMLLRESE  300
LERKPYQADR NVTRLTVFGR NADLIDKFVF QIQASIFHYG SISLIEEPCR STHMAAMAIA  360
KECGCVLSYD PNLRLALWPS EEAAREGIMS IWDKADVIKI SEEEISFLTG GDDPYDDNVV  420
LKKLFHPNLN LLLVTEGSNG SRCYTKVSIS LHCIDEQFFG IRRAIHNLRV RVPDVKVKDV  480
DTTGAGDAFV GGILSSLASD LSLHESSPAS DVLSVPSTIA PAGTENIVNQ GDSVNAQGAN  540
GRNQQPSAEG EKGGKKKVMI QGRGKGRGAV PKGERTSKPG WTGAGFDVHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ey7_A6e-4318951325292Fructokinase
5ey7_B6e-4318951325292Fructokinase
5eyn_A6e-4318951325292Fructokinase
5f0z_A6e-4318951325292Fructokinase
5f11_A6e-4318951325292Fructokinase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play an important role in maintaining the flux of carbon towards starch formation. {ECO:0000250|UniProtKB:Q6XZ79}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0675371e-161JX067537.1 Actinidia chinensis clone 1542631 fructokinase (FK6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234319.11e-150PREDICTED: probable fructokinase-7
SwissprotQ9FLH81e-138SCRK7_ARATH; Probable fructokinase-7
TrEMBLA0A2R6PM350.0A0A2R6PM35_ACTCH; Fructokinase-7 like
STRINGXP_008234319.11e-150(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.18e-48AGAMOUS-like 6
Publications ? help Back to Top
  1. Geisler M,Kleczkowski LA,Karpinski S
    A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis.
    Plant J., 2006. 45(3): p. 384-98
    [PMID:16412085]
  2. Kim BH,von Arnim AG
    The early dark-response in Arabidopsis thaliana revealed by cDNA microarray analysis.
    Plant Mol. Biol., 2006. 60(3): p. 321-42
    [PMID:16514558]
  3. Gibon Y, et al.
    Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes.
    Genome Biol., 2006. 7(8): p. R76
    [PMID:16916443]
  4. Kaplan F, et al.
    Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content.
    Plant J., 2007. 50(6): p. 967-81
    [PMID:17461790]
  5. Keurentjes JJ, et al.
    Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana.
    Genome Biol., 2008. 9(8): p. R129
    [PMID:18710526]
  6. Stein O, et al.
    Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development.
    Front Plant Sci, 2016. 7: p. 2047
    [PMID:28119723]
  7. Stein O, et al.
    Corrigendum: Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development.
    Front Plant Sci, 2017. 8: p. 303
    [PMID:28275383]
  8. Riggs JW,Cavales PC,Chapiro SM,Callis J
    Identification and biochemical characterization of the fructokinase gene family in Arabidopsis thaliana.
    BMC Plant Biol., 2017. 17(1): p. 83
    [PMID:28441933]
  9. Jin S,Kim SY,Ahn JH
    TWIN SISTER OF FT (TSF) Interacts with FRUCTOKINASE6 and Inhibits Its Kinase Activity in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1807
    [PMID:29093731]