PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn319151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 250aa    MW: 28107.7 Da    PI: 5.4441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn319151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+ksFs+      H+rtH
  Achn319151  4 FTCQICSKSFSNGKAVGGHMRTH 26
                89********************9 PP
2zf-C2H218.26.6e-06198220123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C+ C+k+F+++  L  H++ H
  Achn319151 198 YACEFCPKVFKSRQALGGHMKIH 220
                 89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.55E-11426No hitNo description
PfamPF139121.6E-7427IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576677.55E-11193220No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4196221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-5198220IPR007087Zinc finger, C2H2
SMARTSM003553.9E-4198220IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.177198225IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MARFTCQICS KSFSNGKAVG GHMRTHLAFH LLPPKPQGPQ EFEDLNKASP SMPLRFVTGK  60
RSRQCKSMDA MVDIPEEVKT PGLVSVTSPI EDVALSIMML AKGKWKDDKE EKEKEKGKQK  120
MEEDNIISEN ESKEGDDDND EDEDDDYVFY PKRTWTGIHT QMVTRAKARE VTCGEGHPSD  180
QMLENHKSEP NEIDARLYAC EFCPKVFKSR QALGGHMKIH ASTSSDSVKP KINLINLNRP  240
PPEEDDEIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PMN11e-154A0A2R6PMN1_ACTCH; Zinc finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-09C2H2-like zinc finger protein