PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn319461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 235aa    MW: 26787.8 Da    PI: 6.8467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn319461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.2e-0982103426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++++  G+C++G++C+FaHg
  Achn319461  82 VACPDYRN-GECRRGETCHFAHG 103
                 57999999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.2E-577108IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-778104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.40878105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-781106IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-782103IPR000571Zinc finger, CCCH-type
SMARTSM0035619113136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLSSTNPAYY EFSEQELARI DPSHYPDLFD ETIYESDEFR MYGFKIKRCP RMRSHDWTQC  60
PFAQRGEKAR RRDPRRYNYS AVACPDYRNG ECRRGETCHF AHGVFEYWLH PAKYRTRACN  120
AGGLCQRKVC FLAHTAEELR DETKYHYVYR VRSNGGDAVG KVPYGGNRAT SSSATPLVPV  180
APTTRVSGNS DFLASLSGLT IREGARTMGD GIFSWCVPES DDDPDIDWIT EMVE*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831067.12e-80PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650363e-67C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2R6PLT21e-173A0A2R6PLT2_ACTCH; Zinc finger CCCH domain-containing protein
STRINGevm.model.supercontig_13.2453e-76(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA717133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-69C3H family protein