PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn319581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 197aa    MW: 21070.5 Da    PI: 4.8434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn319581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-183280355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr ++ +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++l+g
  Achn319581 32 YRGVRLRS-WGKWVSEIRLPRQ---KSRIWLGSYPTAEMAARAHDVAALALRG 80
                9****998.**********943...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.3E-363194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-313189IPR001471AP2/ERF domain
PfamPF008477.4E-123180IPR001471AP2/ERF domain
PROSITE profilePS5103222.8273188IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-213289IPR016177DNA-binding domain
CDDcd000186.44E-303288No hitNo description
PRINTSPR003678.8E-103243IPR001471AP2/ERF domain
PRINTSPR003678.8E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKHKPTTSSS SATAAAVTTT TTTTTTATSR SYRGVRLRSW GKWVSEIRLP RQKSRIWLGS  60
YPTAEMAARA HDVAALALRG QSATLNFPQL AHKLPCPATA APKDIQAAAA LAAAGEFDGF  120
EIEAQAKITS ATSSCEAQEM GRSLASESSD DDDDALFDLP DLLVDSKMDS SNGFCFASWF  180
NGIEIGFQIE EPFLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1731891473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070570.13e-62ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ76e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2R6RT302e-97A0A2R6RT30_ACTCH; Ethylene-responsive transcription factor
STRINGcassava4.1_021971m2e-54(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]