PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn320511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 247aa    MW: 27605.8 Da    PI: 9.0893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn320511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.8e-34103160259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+vk+s fprsYYrCtsa C+vkk+vers +dp++v++tYeg+H+h+
  Achn320511 103 EDGYRWRKYGQKTVKNSSFPRSYYRCTSAACNVKKRVERSMSDPSIVVTTYEGKHTHP 160
                 8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-3487161IPR003657WRKY domain
SuperFamilySSF1182908.5E-2994160IPR003657WRKY domain
PROSITE profilePS5081130.14897162IPR003657WRKY domain
SMARTSM007743.9E-39102161IPR003657WRKY domain
PfamPF031065.8E-27103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEMLGVQDST PSIFDILQSS TPTHDQTSQA SKPSEVVNQP TTPNSSAISS ATNDEQIGKG  60
VDHEEEDEQQ KTQKQLKPKK KCEKRQREAR FAFMTKSEVD HLEDGYRWRK YGQKTVKNSS  120
FPRSYYRCTS AACNVKKRVE RSMSDPSIVV TTYEGKHTHP STVMSRQAAS TGLPQPGPSF  180
FDAASLVWQR PFIPHHSPFS THLSYTNPTT PSVTEISRFR TTTSALLTDH SLLQDILVPS  240
IVKKES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2792159774Probable WRKY transcription factor 4
2lex_A1e-2792159774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279743.12e-77probable WRKY transcription factor 23
SwissprotO229001e-49WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2R6PNZ91e-178A0A2R6PNZ9_ACTCH; WRKY transcription factor 23
STRINGcassava4.1_012748m1e-72(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-45WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]