PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn320981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-X1
Protein Properties Length: 1123aa    MW: 121417 Da    PI: 8.1055
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn320981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.64.1e-06528546119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C++lCH G CppC 
  Achn320981 528 CGQHSCESLCHSGHCPPCL 546
                 ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.41E-5133203No hitNo description
PROSITE profilePS500168.556140201IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.126143199IPR001841Zinc finger, RING-type
PROSITE patternPS013590143198IPR019786Zinc finger, PHD-type, conserved site
CDDcd060086.66E-5232293No hitNo description
SMARTSM004380.05255273IPR000967Zinc finger, NF-X1-type
CDDcd060086.32E-9300348No hitNo description
SMARTSM004380.0031310329IPR000967Zinc finger, NF-X1-type
CDDcd060084.55E-8364407No hitNo description
SMARTSM004385.0E-4374393IPR000967Zinc finger, NF-X1-type
CDDcd060087.32E-13422470No hitNo description
SMARTSM004380.0046432451IPR000967Zinc finger, NF-X1-type
SMARTSM0043873490520IPR000967Zinc finger, NF-X1-type
CDDcd060087.45E-8518558No hitNo description
SMARTSM004382.0E-4528547IPR000967Zinc finger, NF-X1-type
CDDcd060082.69E-6575623No hitNo description
SMARTSM004380.058585603IPR000967Zinc finger, NF-X1-type
SMARTSM004382.8638668IPR000967Zinc finger, NF-X1-type
CDDcd060081.30E-4666715No hitNo description
SMARTSM004380.12677698IPR000967Zinc finger, NF-X1-type
PfamPF014249.4E-5809874IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.5E-4922966IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MSSQFRNHRT DNNRSRFSQS GRRERVPRGS AANTSASSTG TLANPPSSFN LNPNGNVPRE  60
SSANTSASST STVANAPSSF NLNPNGYGGE RGNTGARHHM GRPSNQRRER GRGNQEEKGS  120
KDMGLPQLVQ EIQEKLTKGT VECMICYDMV GRSASIWSCS SCYAIFHLNC IKKWARAPTS  180
VDSLAAKYQG FNWRCPGCQS VQLTALKEIR YICFCGQRQE PPPDLYLTPH SCGEPCGKPL  240
EKEVPDGTLT KEDLCPHACV LQCHPGPCPP CKAFAPPRLC PCKKKIITTR CSDRKSVLTC  300
GQHCEKLLEC RRHRCERVCH LGHCDPCQVM INASCFCKKK TDVFLCGEMT VKGEVKAEDG  360
VFSCNSVCGK KLGCRNHVCN EICHPGSCGE CDLLPGRIKA CHCGKTSLQE ERQSCLDPIP  420
TCSQVCGKGL PCGVHHCKEN CHAGNCASCT VLVTQRCRCG STSRTVECYK TTMEEEKFTC  480
DKPCGQKKNC GRHRCSEKCC PLSSSKYSRL GDWDPHLCSI TCGKKLRCGQ HSCESLCHSG  540
HCPPCLETIF TDLTCACGGT SIPPPQPCGT PPPSCQYPCS VPQPCGHSST HSCHFGDCPP  600
CPVPIAKECS GGHVVLRNIP CGSRDIRCNK LCGKTRQCGM HACARTCHPP PCDSSCGPSS  660
GLKASCGQTC GAPRRDCRHT CTALCHPSSP CLDVRCEFPV TITCSCGRIT ATVPCNAEGV  720
SGGLNGDTVF EASVIQKLPV PLQPVDAYRK KIPIGQRKLT CDDECVKTER KWVLADAFGV  780
NTPNLDAFHF SENSVVSEAL SELLRRDPKW VLSVEERCKF LVLGRGRGGS SALRVHVFCP  840
MLKEKRDAVR LIAERWKLSV NAAGWEPKRF VVVHVTPKSK APSRVFGAKG SAAVNMLQPP  900
AFDPLTDMDP RLVVALFDLP READISALVL RFGGECELVW MNDKNALAVF SDPSRAATAM  960
RRLDKGSVYY GAIVVPQNGG ASIASSGANT LGGAGFTKDG AASASMKGNP WMKAVVQNQN  1020
WRDSSWGSEE WSAESANMEL SVWKGNDAPI ATSANRWSVL DSATTQISSD ASPGIKDPGK  1080
SSGTQIVLEF EPEASGSNLG GKQESNSTET FDVVDDWEQA YD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097082.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_028097083.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2R6R9B60.0A0A2R6R9B6_ACTCH; NF-X1-type zinc finger protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1