PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn321841
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 338aa    MW: 37283.4 Da    PI: 7.9081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn321841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-14132177454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  Achn321841 132 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 177
                 7999**********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.72128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-19131194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-12132177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-19132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.40E-14132177No hitNo description
SMARTSM003532.2E-17134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MYGNIFFEIC SGEPGLDELT QEDTHYSQTV ATILQHQANR WSESSPSSAA GCLMYSSQSS  60
FSKLPLRSSD QHLHHHHDAD ATSQCLLKCI LFTIPFLHSK YQDDNNSPKS ATAADSVSRF  120
RKPTPQDEPS ANHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLCKK  180
IQDLEARARQ VEIDQLSRSS GDPQRSGVTA AMDKRKLRIV EGSSGAKGKA VDSVAEASTP  240
PLPAPPQPVA GVAVQVQVSI IESDALVELQ CTHREGLLLD VMVLLREHRV EVTAVQSSLS  300
NGVFVAELRA KVKENVNGKK PSIVEVKRAI HQIIPQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-15126191367Transcription factor MYC2
5gnj_B4e-15126191367Transcription factor MYC2
5gnj_E4e-15126191367Transcription factor MYC2
5gnj_F4e-15126191367Transcription factor MYC2
5gnj_G4e-15126191367Transcription factor MYC2
5gnj_I4e-15126191367Transcription factor MYC2
5gnj_M4e-15126191367Transcription factor MYC2
5gnj_N4e-15126191367Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
2137142RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086976.11e-147LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
SwissprotE3SXU41e-107BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2R6P6290.0A0A2R6P629_ACTCH; Basic helix-loop-helix protein like
STRINGVIT_07s0104g00090.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-44bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]