PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn322671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 346aa    MW: 38118.1 Da    PI: 6.5045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn322671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.7e-0990114126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ f++ GtC+y  +C+FaH+
  Achn322671  90 FKTKLCCKFRA-GTCPYTTNCNFAHS 114
                 69*********.*************8 PP
2zf-CCCH18.63.3e-06164189126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 yk + C+ f+    C+yGd+C+F H+
  Achn322671 164 YKGRHCKKFYTEEGCPYGDNCTFLHD 189
                 78888********************7 PP
3zf-CCCH41.81.7e-13225250126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  Achn322671 225 WKTRICNKWELTGYCPFGNKCHFAHG 250
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.04E-887120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-1487122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.12289116IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-489115IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-690114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7162191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-9162191IPR000571Zinc finger, CCCH-type
SMARTSM003560.058163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23163191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-10221255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-17221254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441224252IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9224251IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-11225250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDYGREAGFS CGNVVQILTG PQSNGFDENW GSGPDNQAIW ATEDDYGAWT REASVETISQ  60
TQSGSEPPNK KSRNSQSSDN RSKAIGKMFF KTKLCCKFRA GTCPYTTNCN FAHSVDELRR  120
PPPNWQEIVA AHEEERGVSS EPREEFQIPA LESLAFEGEA QRSYKGRHCK KFYTEEGCPY  180
GDNCTFLHDE QSRARESVAI SLGPGSGGGT YGNNVSAANL KPSNWKTRIC NKWELTGYCP  240
FGNKCHFAHG AQELHRYGGG LMEGEDRDAL SAPPDIKQGV VPSKTPADSV VASMISVPHS  300
DGYHIGVPSQ RLSNVIQRTG QRPHQKWKGP DKISRIYGDW IDDVE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118033.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-127C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2R6QPF40.0A0A2R6QPF4_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010240878.11e-176(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-130C3H family protein