PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn323811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 211aa    MW: 24602.7 Da    PI: 6.7778
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn323811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-2063116356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t+eq++ Le+ Fe+++++  e++++LAkk+gL+ rqV+vWFqN+Ra++k
  Achn323811  63 KKRRLTPEQVHLLEQSFEEENKLEPERKTQLAKKVGLQPRQVTVWFQNHRARWK 116
                 5678*************************************************9 PP
2HD-ZIP_I/II128.72.4e-4162152191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv+lLE+sFeee+kLeperK++la+++glqprqv vWFqn+RAR+ktk+lE++y+ Lk++y++l +e ++++ke+e+L++el
   Achn323811  62 EKKRRLTPEQVHLLEQSFEEENKLEPERKTQLAKKVGLQPRQVTVWFQNHRARWKTKHLEREYDCLKSSYESLISECDSIHKENEKLKAEL 152
                  69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.11958118IPR001356Homeobox domain
SMARTSM003893.9E-1961122IPR001356Homeobox domain
SuperFamilySSF466895.13E-1963129IPR009057Homeodomain-like
CDDcd000867.15E-1763119No hitNo description
PfamPF000461.5E-1763116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-2164125IPR009057Homeodomain-like
PRINTSPR000314.8E-58998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000314.8E-598114IPR000047Helix-turn-helix motif
PfamPF021833.5E-12118152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDSGRLFFDP SRYGNMFFGN SDPIFRGPRS VMGLQEPLKR RTFFTSPDEV FDEEYYDEQL  60
PEKKRRLTPE QVHLLEQSFE EENKLEPERK TQLAKKVGLQ PRQVTVWFQN HRARWKTKHL  120
EREYDCLKSS YESLISECDS IHKENEKLKA ELGSEHCVYT QGDDSLAVLF QPSAFSSIPT  180
CCKSHNVLYY QLAIRFTSKK AVSSELNCLN *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183510.11e-81PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022833e-59HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2R6P9C11e-106A0A2R6P9C1_ACTCH; Homeobox-leucine zipper protein
STRINGXP_009622827.13e-78(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-61homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]